You can specify the desired configuration scheme shown below when using the quartus_pfg command line tool to convert a programming file.
quartus_pfg -c -o mode=PS|FPP|ASX1|ASX4|AVSTX8|AVSTX16|AVSTX32|INTERNAL <input file> <output file>
You can also define the settings using the GUI in the Intel® Quartus® Prime Pro Edition Software and save it as a Programming File Generator (PFG) setting file (.pfg). The following command gives an example of how to use the .pfg file.
quartus_pfg -c <input_pfg_file>